PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04420.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 192aa    MW: 22682.2 Da    PI: 4.4564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04420.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.6e-3181291128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL      +++e+y+F+k++ ++    +k r t sgyW++ 
  Rsa1.0_04420.1_g00004.1   8 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNTEVYYFVKKEDRE----KKGRETLSGYWEEF 84 
                              79*************************999..49*************6...45778*******99876....6789999*****98 PP

                      NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               + +ev+++     ++l g kkt++fy g++p+g+ t W+m e+rl
  Rsa1.0_04420.1_g00004.1  85 EE-EEVMESgdrgCNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 129
                              76.66666657666677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-325139IPR003441NAC domain
PROSITE profilePS5100532.028166IPR003441NAC domain
PfamPF023652.0E-189129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNGRSMRLPP GFRFDPDDED LVFEYLAKKV LHRPMDFDLP ELRSCNVDPW DLLGDKNTEV  60
YYFVKKEDRE KKGRETLSGY WEEFEEEEVM ESGDRGCNHL EGRKKTFAFY IGKRPRGTIT  120
PWIMYEFRLL SSRATRWSSS SLPWVSHSSL PWGEVENWRA VKVIVKEENE EEIEEDEQAS  180
DESDGEEVVQ SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-18613015143NO APICAL MERISTEM PROTEIN
1ut4_B7e-18613015143NO APICAL MERISTEM PROTEIN
1ut7_A7e-18613015143NO APICAL MERISTEM PROTEIN
1ut7_B7e-18613015143NO APICAL MERISTEM PROTEIN
4dul_A7e-18613015143NAC domain-containing protein 19
4dul_B7e-18613015143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04420.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747650.0KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455122.11e-113PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A0D3E9S11e-106A0A0D3E9S1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E8161e-106A0A3P6E816_BRAOL; Uncharacterized protein
STRINGBo9g097190.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-80NAC domain containing protein 97