PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04489.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 135aa    MW: 15461.1 Da    PI: 10.8164
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04489.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind38.23.7e-127101197
                              HHHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
             HSF_DNA-bind   1 aFlkklyeiledeelkelisws.engnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                              +F  +ly+i++d++ + +isws ++ n fvv+d +++ +++L k    +   +n + F+  L   gF++v +  ++        eF
  Rsa1.0_04489.1_g00003.1   7 TFYVQLYNIVDDPSSDPIISWSkSSPNGFVVWDLKTLRRDILMKsssgVLLGRNSTEFISNLRSHGFRSVLKGFGE-------LEF 85 
                              5899******************6666****************88666678899*********************99.......*** PP

                              EESXXXXXXXXXXXXX CS
             HSF_DNA-bind  82 khksFkkgkkelleki 97 
                              +h  F++g  ++ +k+
  Rsa1.0_04489.1_g00003.1  86 EHVDFTRGFVTKKKKM 101
                              ****999876655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.3E-74104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-13593IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-10593IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.4E-9897IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MIRKLSTFYV QLYNIVDDPS SDPIISWSKS SPNGFVVWDL KTLRRDILMK SSSGVLLGRN  60
STEFISNLRS HGFRSVLKGF GELEFEHVDF TRGFVTKKKK MVKALSERFD AQIKAIKCRF  120
KAKNLKVDLI ISSPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04489.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479658.12e-73PREDICTED: heat shock factor protein HSF8-like
TrEMBLA0A078HEM51e-64A0A078HEM5_BRANA; BnaC04g32080D protein
STRINGBra025611.1-P2e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-11Winged helix-turn-helix transcription repressor DNA-binding