PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04490.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 223aa    MW: 25341 Da    PI: 4.8042
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04490.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-183178148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ll ++v+  G g+W+++a + g++R++k+c++rw +yl
  Rsa1.0_04490.1_g00001.1 31 KGPWTPEEDKLLTEYVASSGEGRWSSVATCAGLNRSGKSCRLRWVNYL 78
                             79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-222581IPR009057Homeodomain-like
PROSITE profilePS5129422.8412682IPR017930Myb domain
SMARTSM007178.7E-163080IPR001005SANT/Myb domain
PfamPF002492.2E-173178IPR001005SANT/Myb domain
SuperFamilySSF466895.7E-2132103IPR009057Homeodomain-like
CDDcd001672.12E-123378No hitNo description
Gene3DG3DSA:1.10.10.609.8E-782103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLDWKVDQVH QRNHDHEPYQ KPQQQLQGCR KGPWTPEEDK LLTEYVASSG EGRWSSVATC  60
AGLNRSGKSC RLRWVNYLRP GLKRGQITPE EEGIILELHS LWGLQPQPQN QRSQLVSQDH  120
MNLDNEQNIA SSFSYPLIVI NDQFHMPQSV TATSSDYSMI DECNLWGSLW SLHDEDLQSN  180
GGDWEQRPAA DIAEKFNGGR IEAPPCGSGE YNYNGFYTGG YIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04490.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719801e-87AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195931e-87AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619948.11e-133PREDICTED: myb-related protein 340-like
TrEMBLA0A3P6DHJ51e-132A0A3P6DHJ5_BRAOL; Uncharacterized protein
STRINGBra020744.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.15e-99myb domain protein 121