PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04493.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 194aa    MW: 21291.6 Da    PI: 8.9138
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04493.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.6e-383493261
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                             ++++l+cprCds ntkfCyynny+l qPr+fCk+CrryWtkGG+lr +PvGgg+rkn ++
  Rsa1.0_04493.1_g00002.1 34 EQEQLNCPRCDSPNTKFCYYNNYNLLQPRHFCKSCRRYWTKGGSLRYIPVGGGSRKNSSK 93
                             57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.8E-323692IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1183892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-194082IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQEDLTSAAA YYHHQSLIMA TAKQQQQQQP GLPEQEQLNC PRCDSPNTKF CYYNNYNLLQ  60
PRHFCKSCRR YWTKGGSLRY IPVGGGSRKN SSKRSSVGSS SSSSSAPSST SPKSKTVSVS  120
DQERSVMGSS EMDPTRMLYG LPVGDPSGGS FSSLLASNMQ QIRGVNYQTG SGWYPGMELG  180
LGFRISDDDT VEKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04493.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893448e-55AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449146.11e-141PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821551e-78DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A397Y7333e-92A0A397Y733_BRACM; Uncharacterized protein
STRINGBra014297.1-P5e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.16e-60DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]