PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04499.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 91aa MW: 10010.1 Da PI: 4.6439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04499.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.5e-12	42	78	1	37
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskk 37 rW++ e+laL+++r+em++++r++ lk plWee+s++ Rsa1.0_04499.1_g00001.1 42 RWPRPETLALLRIRSEMNKTFRDSTLKTPLWEEISRF 78 8**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MSGDSSGLLD SSRGGGVGGS GEEEKDIKME ETGDVGGGGG NRWPRPETLA LLRIRSEMNK 60 TFRDSTLKTP LWEEISRFYT FSDVSILSYF R

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04499.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478956.1	2e-45	PREDICTED: trihelix transcription factor GT-2-like isoform X1
Swissprot	Q39117	8e-21	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A3N6R2J8	7e-24	A0A3N6R2J8_BRACR; Uncharacterized protein (Fragment)
STRING	XP_010533325.1	4e-22	(Tarenaya hassleriana)
STRING	A0A087HJ00	5e-22	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29141	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-19	Trihelix family protein