PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04545.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 175aa    MW: 20358.4 Da    PI: 9.4895
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04545.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.12.1e-17431362102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHH.HTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLn.mYgFkkvkdeekkskskekiweFkhksF 86 
                              F   lyei++d+++++++sws++g+sf+ +++++f +++L   +  + f  F+  L  +Y F+kv+++e+         e++h++F
  Rsa1.0_04545.1_g00005.1  43 FADVLYEIVDDPKTDSIVSWSQDGKSFIFWNQDKFCSDILLPKYGLTTFPTFIGRLSvTYRFRKVEESEH--------CEYAHDYF 120
                              77889************************************************999846*******9995........6******* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +gk el  +i+r+ +
  Rsa1.0_04545.1_g00005.1 121 VRGKPELTVEIERQFK 136
                              ************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-2039134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-1743134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-2043134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.42E-1743133IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAGKINAREL SSPEGIPMAG RVKEYYRYPA LEASRKGLVR RYFADVLYEI VDDPKTDSIV  60
SWSQDGKSFI FWNQDKFCSD ILLPKYGLTT FPTFIGRLSV TYRFRKVEES EHCEYAHDYF  120
VRGKPELTVE IERQFKERCA PIKNIKPPEP GSREIRERRM ALILAQKAAR NLSIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04545.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436689.11e-125PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A398ANR82e-88A0A398ANR8_BRACM; Uncharacterized protein
STRINGBra029226.1-P2e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.12e-17heat shock transcription factor A7A