PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04569.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 198aa    MW: 22981.7 Da    PI: 4.3895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04569.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.49.4e-2261381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              lp+GfrF+Ptd e+ +++L++k+ +++++   v ke+ di++ +P+dLp   + +e++wyf++++  ++ t   +n    +++Wk+
  Rsa1.0_04569.1_g00003.1   6 LPVGFRFRPTDCEISKYFLTRKALEQPMRSPIVPKEChDIFSRHPRDLPG--YPRETHWYFYCRKLDSQVT---PNS---HSIWKQ 83 
                              79**************************9988899999***********4..34789******99886643...444...578*** PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                               g+++ vl++   ++lvg+k++++f             ++ ++ + +W+m+e++l
  Rsa1.0_04569.1_g00003.1  84 IGEETGVLDTknYDALVGIKRVFTFVdheeepndilLSDEDEPPQYNWFMDEFSL 138
                              ********98545566**********766655554436777888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-275155IPR003441NAC domain
PROSITE profilePS5100529.1936155IPR003441NAC domain
PfamPF023657.2E-157138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEPKALPVGF RFRPTDCEIS KYFLTRKALE QPMRSPIVPK ECHDIFSRHP RDLPGYPRET  60
HWYFYCRKLD SQVTPNSHSI WKQIGEETGV LDTKNYDALV GIKRVFTFVD HEEEPNDILL  120
SDEDEPPQYN WFMDEFSLPL TISETDWVLC HVFRKNIEPG SESEEEGENE EKETVEAESL  180
DLLLAKDGNV LPPSPSPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04569.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325431e-166AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444528.11e-126PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A078FEP11e-110A0A078FEP1_BRANA; BnaC06g13440D protein
TrEMBLA0A0D3CT731e-110A0A0D3CT73_BRAOL; Uncharacterized protein
STRINGBo6g064960.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-78NAC family protein