PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04602.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 427aa    MW: 46792.9 Da    PI: 8.628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04602.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-06106126526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+f+ + G Ck Gd C+F H+
  Rsa1.0_04602.1_g00003.1 106 VCKFWKA-GNCKKGDHCSFLHS 126
                              5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-699126IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5101127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6101126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497106128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.92E-45132180IPR017986WD40-repeat-containing domain
SMARTSM003201.3E-5132171IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.9E-45134422IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029419.327139343IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984139180IPR001680WD40 repeat
PfamPF117154.1E-6154196No hitNo description
PROSITE patternPS006780158172IPR019775WD40 repeat, conserved site
PRINTSPR003203.6E-8158172IPR020472G-protein beta WD-40 repeat
SMARTSM0032050211248IPR001680WD40 repeat
SuperFamilySSF509781.92E-45218423IPR017986WD40-repeat-containing domain
SMARTSM003200.0011256294IPR001680WD40 repeat
PfamPF004008.9E-5260294IPR001680WD40 repeat
PROSITE profilePS5008210.442278303IPR001680WD40 repeat
PRINTSPR003203.6E-8281295IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780281295IPR019775WD40 repeat, conserved site
SMARTSM003207.5E-6297334IPR001680WD40 repeat
PfamPF004000.0017299333IPR001680WD40 repeat
PROSITE profilePS500829.506304333IPR001680WD40 repeat
PRINTSPR003203.6E-8321335IPR020472G-protein beta WD-40 repeat
SMARTSM0032069340381IPR001680WD40 repeat
SMARTSM003202.4384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSYYKAPRRR YSNGRNFGVE RQEESLVADI LPRRPYGNRA PNNKWSRNLV WTASHGNNKP  60
MKTDNTYAST RPQPSSVSNL LQRKKDAAYG QRSSYVSDSP KSKECVCKFW KAGNCKKGDH  120
CSFLHSWTSL PGMLLVATLE GHKKDLKGIA LPQGSDKLFS ASSDGTLRIW DCHTGQCVHT  180
INLQAEAGSL MSEGPWVFLG LPNAVKAFNV QTSKELHLNG VVGQVRAMTV GNGMLFAGTS  240
SGSISVWKAN DTDSDPFTYL TSLEGHHSGE VTCFVVGGQQ LYSGSLDRTI KVWDLNTLEC  300
TMTLRQHTDA VTSLVCWDQY LISSSLDGTI KVWACSENGS LKVTKTHRQE QSVHTLCGMS  360
DGEGKPIMFC SYQNGTVSIC DLPSFEERGK MFSTNTVGAI TVGPEGLLFT GDKSGKLCVW  420
NLAGTKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B1e-18124386130393F-box/WD repeat protein 7
2ovq_B1e-18124386130393F-box/WD repeat protein 7
2ovr_B1e-18124386130393F-box/WD repeat protein 7
5v4b_B1e-18124386130393F-box/WD repeat-containing protein 7
6g6m_A4e-1913838410323Tako8
6g6n_A4e-1913838410323Tako8
6g6n_B4e-1913838410323Tako8
6g6n_C4e-1913838410323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04602.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448936.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C1Y00.0A0A3P6C1Y0_BRACM; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein