PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04608.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 224aa    MW: 25071.3 Da    PI: 6.6847
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04608.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.91.7e-109722186
                 trihelix 21 lrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                             l+rg+l++++W+ev++++       g  ++ +qCk++++ l+k+yk +k+  ++      s++ +f++l+
  Rsa1.0_04608.1_g00001.1  9 LSRGNLRQNDWKEVADAVnsrhGGNGQPKTDVQCKNRIDTLKKKYKTEKAKPSS------SSWCFFERLD 72
                             6899**************97555566789999****************998886......5799**9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-17673No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPTPRYVHLS RGNLRQNDWK EVADAVNSRH GGNGQPKTDV QCKNRIDTLK KKYKTEKAKP  60
SSSSWCFFER LDFLIGPAAA KKSTAAGAFR SPVTKPAGSV LSGSSLNDDD EDDEDDDDVE  120
GDWGFVARKH RRVEGVVDRS VGEGEGSSCR ELARAILKLG EVYERIESAK QGMMIELEKQ  180
RMEAANEIEL QRMNMLMDMQ MELEKSKLGK HKIDIDSHTV LKTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04608.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535511e-69AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489305.11e-151PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A397ZGB41e-102A0A397ZGB4_BRACM; Uncharacterized protein
TrEMBLM4F1C01e-102M4F1C0_BRARP; Uncharacterized protein
STRINGBra034866.1-P1e-103(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.16e-79sequence-specific DNA binding transcription factors