PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04612.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 566aa    MW: 62829.6 Da    PI: 6.8866
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04612.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.9e-21274329156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR++ k
  Rsa1.0_04612.1_g00001.1 274 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQLK 329
                              688999**********************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031411.8E-2896187IPR004159Putative S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:1.10.10.603.0E-21245332IPR009057Homeodomain-like
SuperFamilySSF466897.94E-21257331IPR009057Homeodomain-like
PROSITE profilePS5007117.605271331IPR001356Homeobox domain
SMARTSM003895.0E-19272335IPR001356Homeobox domain
CDDcd000869.23E-19274331No hitNo description
PfamPF000462.2E-18274329IPR001356Homeobox domain
PROSITE patternPS000270306329IPR017970Homeobox, conserved site
SuperFamilySSF559619.34E-5456554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008168Molecular Functionmethyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MNLFTRISSR DKKSNLYYLT LVAILCVGSY LLGIWQNSTV NPRAAFDTST DAPCEKFSKT  60
TSTRDLDFNA HHSPHDPPPV TVTAVKFPSC DAELSEHTPC EDAKRSLKFS RERLEYRQRH  120
CPDREEALKC RIPAPYGYKT PFRWPESRDV AWFANVPHTE LTVEKKNQNW VRGFLNHDDD  180
KSPGGETVGG GNYFFSPAAA MSGGPVQSIF SSPRLSLGLQ TNVENNGGEV GRTGESFEVS  240
VARKSPESRS GSDHADALSG DDDLDASDRP LKKKKRYHRH TPQQIQELES VFKECPHPDE  300
KQRLDLSRRL NLDSRQVKFW FQNRRTQLKT QIERHENSLL RQENDKLRAE NMSVREAMRH  360
PMCSHCGGSA VLGEISLEEH QLRIENSRLK DELDRLCALA GKFINRSDEA VSHHLPNSPL  420
KLGVGSKNVC DGSGFTLVPP GFEISPFFSG LEAPAMNASQ SSMLILQETS IDASGATVVY  480
APVDIPAMHS VMNGGDSAYV ALLPSGFAIL PDVQGTEETG SLFTVAFQIL VNSLPTAKLN  540
VESIETVSNL ISCTVQKIRA ALRCDK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04612.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1532621e-171EU153262.1 Brassica rapa cultivar Osome dehydration-responsive family protein S51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434260.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
RefseqXP_018434262.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X2
SwissprotQ9M2E81e-101HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLM4CL481e-172M4CL48_BRARP; Uncharacterized protein
STRINGBra004934.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3230222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.17e-82homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]