PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04629.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 505aa    MW: 54944.7 Da    PI: 4.9455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04629.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15322369355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++hn  ErrRR++iN+++ +L+el+P +      K +K+++L  A+eY+ksLq
  Rsa1.0_04629.1_g00003.1 322 EMHNLSERRRREKINERMKTLQELIPRC-----NKTDKSSMLDDAIEYVKSLQ 369
                              58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20317387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.26319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-17322373No hitNo description
PfamPF000104.0E-13322369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-21323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-17325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDEPEAKEDL TDDSSSRSST STSSSSSLNL NLPLDQFIMG EDDIVELLRK SGQVVSSSQT  60
QRPSVPPPVL RGSGSGGGGG EESAPLPLPQ PPPLYSTSDQ NLLIHEDEMA SWLHHHPPPL  120
LGEEDEFRPH LFYSGGLVST PFTQPQGSLP LTPPLPLQPP PPPASVIYTP TAAQRPICQF  180
TTWRRAENFT NFSRLRVEGA AGPWVTGGGV AQTFAVPRAV SGIAGPVVSE TGTEPVQIQP  240
AAAATEREAA GEDERKRKER EETAAGDTEV STESTVEAYR TLSEILCISA ARDLFLDVEP  300
PASLKLEAAG GSTSRKRSRA AEMHNLSERR RREKINERMK TLQELIPRCN KTDKSSMLDD  360
AIEYVKSLQM QIQMMSAGGG MMPPMMYTPP NMQQFMPPSA MGMNRPPFIP FPGTAFPRPP  420
AHLAGLCPPY PAPRYPFPSR VQQPDPVQNQ PQFPGYFNPY SQFVGLQQMQ QSPPPPLQNQ  480
TTSQQSISQA SSSKAPEDQD NKPTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314331RKRSRAAEMHNLSERRRR
2327332ERRRRE
3328333RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04629.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775861e-55AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467782.11e-180PREDICTED: transcription factor bHLH119-like
SwissprotQ9SVU71e-111BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A0D3A3N71e-142A0A0D3A3N7_BRAOL; Uncharacterized protein
STRINGBo1g017090.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.16e-55bHLH family protein