PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04673.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 220aa MW: 25971.2 Da PI: 7.0056

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04673.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52	1.8e-16	48	118	1	72
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W++++v+++i + +++++ + ++k +W+++ k+m erg + sp++C++k+++lnk ykki+++ +++t Rsa1.0_04673.1_g00002.1 48 KWMDEMVKLMIIVLFYLGDNDHKH-ARKSKWRSIFKFMDERGHHFSPQKCEDKFNDLNKLYKKINDMLGRGT 118 7*****9999999888776555.899*************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-13	46	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MMIPSVHHNF SITEYKNGQR WTGQEDDGDG HNESNKSSTK ISPWGRVKWM DEMVKLMIIV 60 LFYLGDNDHK HARKSKWRSI FKFMDERGHH FSPQKCEDKF NDLNKLYKKI NDMLGRGTYC 120 DVNRDGDEHV KLQNEDLVDG DDYEEPNMYQ KDCGESYVGA SLGGELKRLR RNQNHEYLGH 180 PNHANKGYVP HLHKQWTKYK SLELEELKLQ IQTELMALER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04673.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104656.1	1e-54	PREDICTED: uncharacterized protein LOC103830595
Refseq	XP_013648723.1	1e-54	uncharacterized protein BNAA07G21220D
TrEMBL	A0A397YV49	3e-53	A0A397YV49_BRACM; Uncharacterized protein
TrEMBL	M4CHM1	3e-53	M4CHM1_BRARP; Uncharacterized protein
STRING	Bra003704.1-P	5e-54	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	4e-36