PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04673.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 244aa    MW: 28903.3 Da    PI: 9.264
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04673.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.4e-1774159186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                              +W+ ++v ++i+a ++++++  +  ++k+ W++v+k++ e+g+++sp+q k+k+++ n+rykk++e+ ++ t +++ +++++++++
  Rsa1.0_04673.1_g00003.1  74 KWMVKMVELMITALSYLGDNDHKH-ARKGNWRSVAKVIDEGGYHVSPQQYKDKFNDHNNRYKKLNEMIGRVTcCDVIENHALLHKI 158
                              7***************99886665.8999*****************************************9758899999999998 PP

                 trihelix  86 e 86 
                              +
  Rsa1.0_04673.1_g00003.1 159 D 159
                              7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1273185No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRYLSPNVMD RRQHHLISPR DLSLPFTMMI PSVHHNFPVT EYKNGQRWTS EEDYGDGHNE  60
SDKSKKCCPR KLVKWMVKMV ELMITALSYL GDNDHKHARK GNWRSVAKVI DEGGYHVSPQ  120
QYKDKFNDHN NRYKKLNEMI GRVTCCDVIE NHALLHKIDY LDEKEKDEDR KLVRSKHLFY  180
EEMCSYLNEN MLHLPHDPAL HPPLALRCHD NDERRNAKMK ILIVVMTVRN KTYLKRIVGK  240
AMVH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04673.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104656.16e-95PREDICTED: uncharacterized protein LOC103830595
RefseqXP_013648723.16e-95uncharacterized protein BNAA07G21220D
TrEMBLA0A397YV491e-93A0A397YV49_BRACM; Uncharacterized protein
TrEMBLM4CHM11e-93M4CHM1_BRARP; Uncharacterized protein
STRINGBra003704.1-P2e-94(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-58