PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04673.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 86aa    MW: 8909.89 Da    PI: 4.3022
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04673.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.33e-115286135
                 trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevs 35
                             rW++qe+laL+++r++m+ ++r+++ k+plWeevs
  Rsa1.0_04673.1_g00004.1 52 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVS 86
                             8*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MQLGGSTTTA ATASAPPPSN DSATIEAAAA AAAVGAFEVS EEMNDRGFGG NRWPRQETLA  60
LLKIRSDMGI AFRDASVKGP LWEEVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04673.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892039e-96AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446335.15e-52PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A397YNA23e-34A0A397YNA2_BRACM; Uncharacterized protein
TrEMBLA0A3P6BBB93e-34A0A3P6BBB9_BRACM; Uncharacterized protein
STRINGBra003703.1-P8e-35(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3232422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-30Trihelix family protein