PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04711.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 809aa    MW: 91415.5 Da    PI: 6.5472
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04711.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.19e-1138114190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fY+eYA+++ F+ +  +      + +   r+fvC  + +++++++               C+a+l+++++  +kw vtk+++eH+
  Rsa1.0_04711.1_g00001.1  38 SFYDEYARQLSFTSKLLSLPPD-SSSSSSAREFVCCSSSSKRSRRRP-----------AEICDAMLRIELK-GHKWIVTKFVKEHS 110
                              5*************99998887.555588999999988776665554...........678**********.9************* PP

                     FAR1  87 Hela 90 
                              H la
  Rsa1.0_04711.1_g00001.1 111 HGLA 114
                              *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-639114IPR004330FAR1 DNA binding domain
PfamPF105511.9E-22214305IPR018289MULE transposase domain
PROSITE profilePS5096610.732490526IPR007527Zinc finger, SWIM-type
PfamPF044348.9E-10496524IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-8501528IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MDDDIHLVDP MVNQEMDEIG VAEPCVGMEF DSEKEAKSFY DEYARQLSFT SKLLSLPPDS  60
SSSSSAREFV CCSSSSKRSR RRPAEICDAM LRIELKGHKW IVTKFVKEHS HGLATPNTLH  120
CLRPRRHFAT SNVPSGMMYV SMDGGSRAAA ASKDPKRTLG RDAHNLLEYF NRMQAENPGF  180
FYAIQLDDDN NQMTNVFWAD SRSRIAYTRF GDTVTLDTRY KSSQFLVPFA PFTGVNHHGQ  240
AVLFGCALIL DESEASFIWL FKTFLTAMRD HPPVSLVTDQ DRAIQIAASQ VFPGARHCIN  300
KWDVLREGQD KLAHVSLAYP SFQVDLYNCI NFTETVEEFE SSWSSIVDKY DLGRHEWLSS  360
IYNARAQWVP VYFRDSFFAA LFPTTQGSFF DGYVNQQTTL PIFFRLYERA MESWFEMEIE  420
ADHDTANTPP ILKTPSPMES QAANLYTRRI FEKFQAELVE TFAYTANRID DDGTSTTFRV  480
AKFENDNKAY MVSFCYPEMR ASCSCQMFEH SGILCRHVLT VFTVTNILTL PPHYILGRWT  540
RNAKSVVEMD ERVSDDGLLH RYNHLCREAI KYAEEGAVTP ETYNIALGAL REGGKKVSAV  600
RKSVGRAAPP SSHGGDAKTS LSASDSTPLL WPRHDEMTRR FNLNDGGARA QSVADLNLPR  660
MAPISLHRDD GAPENMVALP CLKSMTWGME SKNTIPGGRV AVINLKLHDY RKFPSADMEV  720
KFQLSSVTLE PMLRSMAYIS EQLSAPANRV AVINLKLQDT ETTTGESEVK FQVSRDTLGA  780
MLRSMAYIRE QLSIVGELQT EPQGKKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04711.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893330.0AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476843.10.0PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3P6AUK80.0A0A3P6AUK8_BRAOL; Uncharacterized protein
STRINGBo3g041650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]