PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04790.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 255aa MW: 27273.2 Da PI: 5.6544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04790.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.4e-05	144	183	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Rsa1.0_04790.1_g00002.1 144 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 183 67788999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.89	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	139	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.89E-4	142	187	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-7	143	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGDTSEDQDD RSFSELLMLS DGPPSSSDHH LINAGADGGE DSFGFVFSDP NGSRMLCFSG 60 ESQNDDKSLF LQPSLPSGVS VSGPSCTTNI CQNSNDACAE NQSTKSSTKK RNGSVNGETM 120 DHNRKPSKKC KQNQEKTSVG TAKVRKERLG ERIAALQQLV SPYGKTDAAS VLHEAMGYIK 180 FLQDQIQVLC SPYLINYSLD GGVVTGDVRA GKKVTDLRSR GLCLAPVSST VLVESSNGAD 240 FWSPATMGHT TSFTQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04790.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437822.1	0.0	PREDICTED: transcription factor bHLH113-like
Swissprot	Q9LT67	1e-133	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A398AR96	1e-162	A0A398AR96_BRACM; Uncharacterized protein
STRING	Bra038211.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-128	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]