PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04805.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 130aa    MW: 14793.5 Da    PI: 6.3332
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04805.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.5e-14231021197
                              HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                              + ++ l +p  f+ +h  g ++   kt +l++ es ++W vk+  ++ +    +t+GW++F+  ++ + gD+++F+++g++ f  +
  Rsa1.0_04805.1_g00001.1  23 FHTH-LNIPVAFFLKHvqG-SNDHIKTAKLRTdESEKTWLVKI--NGLR----FTDGWQDFAVTHEFRIGDIIIFRHEGEMVF--H 98 
                              4445.99**********63.4444467888776999*******..5555....9**********************9998888..8 PP

                              EEEE CS
                       B3  94 vkvf 97 
                              v++f
  Rsa1.0_04805.1_g00001.1  99 VTAF 102
                              8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-229107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-209112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77112105IPR003340B3 DNA binding domain
CDDcd100171.99E-1513102No hitNo description
SMARTSM010194.8E-2015105IPR003340B3 DNA binding domain
PfamPF023621.9E-82699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAIDKSLHSP NNPHFFQPLL PGFHTHLNIP VAFFLKHVQG SNDHIKTAKL RTDESEKTWL  60
VKINGLRFTD GWQDFAVTHE FRIGDIIIFR HEGEMVFHVT AFGPSCCDIQ YTSASSHNIS  120
DDSDDQTNNT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04805.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462801.14e-83PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP32e-53REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397XYM32e-76A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRINGBra024697.1-P2e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.18e-56B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]