PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04827.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 180aa    MW: 20173.8 Da    PI: 5.229
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04827.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.6e-3871071100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C +Ck+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqq
  Rsa1.0_04827.1_g00003.1   7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISNLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQ 92 
                              7***********************9979********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+ +l+a+++ll+ee
  Rsa1.0_04827.1_g00003.1  93 QVVSLQAQVVLLREE 107
                              *********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0266108IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISNLPVHD  60
RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR KFPQEDCMEQ  120
GKVLGEDMPQ NLHSWFHQVV SDSNLNQMSD VASTSMERNE SFCSSSESLY YPEAMFPWSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3631017104LOB family transfactor Ramosa2.1
5ly0_B5e-3631017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04827.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-143AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438632.11e-133PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW51e-100LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078FFC41e-126A0A078FFC4_BRANA; BnaA05g11430D protein
TrEMBLA0A291LR541e-126A0A291LR54_BRARR; Transcription factor LBD14
STRINGBo4g052270.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.17e-85LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]