PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04924.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 107aa MW: 12270.9 Da PI: 5.7487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04924.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	72	100	1	29
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk 29 ++++h +Er+RR ++ s f Lr+llP Rsa1.0_04924.1_g00004.1 72 KKMKHRDIERQRRLEVSSLFKSLRSLLPL 100 6899************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.74E-7	63	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.57E-6	69	100	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-5	70	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.693	71	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-5	72	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MDFVTSLFMP DLTDEDGLPF TDSFLSPLIS YQNHDVCNPI ADKNGVSKKK RSVCDTYGES 60 EANKGDDDRE SKKMKHRDIE RQRRLEVSSL FKSLRSLLPL QYIQVAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04924.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453987.1	3e-73	PREDICTED: transcription factor bHLH125-like
Swissprot	Q9LQ08	2e-46	BH125_ARATH; Transcription factor bHLH125
TrEMBL	A0A0D3E3T0	1e-56	A0A0D3E3T0_BRAOL; Uncharacterized protein
STRING	Bo9g028760.1	2e-57	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6228	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62975.1	9e-49	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]