PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05066.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 250aa    MW: 28563.4 Da    PI: 8.5628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05066.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-10291101399
                              TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              ++  ++p +f++   ++    +  +++  ++++sW++ l     +++ +++++ W eFv++n L   D++vF++++++ f   v++
  Rsa1.0_05066.1_g00003.1  29 KSKRIIPEEFLRGTcES---FEHRVVFSVPWNNSWQLWL--HPDKKGlFMIKEDWDEFVDDNFLGPDDTLVFTHQNTMYF--QVRI 107
                              35578999999877432...3346***************..6666666*************************8877888..8998 PP

                              E-S CS
                       B3  97 frk 99 
                              f+k
  Rsa1.0_05066.1_g00003.1 108 FKK 110
                              876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1313112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-1414111IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-916111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.27817111IPR003340B3 DNA binding domain
PfamPF023622.1E-828110IPR003340B3 DNA binding domain
CDDcd100173.07E-1028109No hitNo description
SuperFamilySSF1019361.18E-7158234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-4159235IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.84165249IPR003340B3 DNA binding domain
PROSITE profilePS508637.26213250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSPERKMQEC LSKSSFSKSL SPGQNWKSKS KRIIPEEFLR GTCESFEHRV VFSVPWNNSW  60
QLWLHPDKKG LFMIKEDWDE FVDDNFLGPD DTLVFTHQNT MYFQVRIFKK DGKEIISAPL  120
GVEPKKETTS ASTSASGRTT TRGRKSCANV QNPERYLLNP QNPYCAKTVT KSNHLLYGLE  180
FGPRDSSMYF ILPDGKKVDG LTKYYSGSPS FLGWENVCQQ YNLKTGDTVV CEFELSGRVV  240
AGVRVHFVNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05066.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489812.11e-177PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D92e-93Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A398A3Q51e-162A0A398A3Q5_BRACM; Uncharacterized protein
STRINGBo3g071320.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.38e-81B3 family protein