PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05173.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 422aa    MW: 47657.9 Da    PI: 7.5707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05173.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.2e-1799145148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT eEd +l+++v+q+G + W+ +++++  gR +kqc++rw+++l
  Rsa1.0_05173.1_g00002.1  99 KGQWTSEEDRKLIRLVRQHGDRKWAIVSEKLE-GRAGKQCRERWHNHL 145
                              799*****************************.*************97 PP
2Myb_DNA-binding52.51.1e-16152193245
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + W++eE++ lv+a+ + G++ W+ Ia+ ++ gRt++++k++w+
  Rsa1.0_05173.1_g00002.1 152 DGWSEEEEKVLVEAHIRIGNK-WAEIAKLIP-GRTENSIKNHWN 193
                              56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.02994149IPR017930Myb domain
SuperFamilySSF466896.11E-2896192IPR009057Homeodomain-like
SMARTSM007176.2E-1598147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-25100152IPR009057Homeodomain-like
CDDcd001674.11E-14102145No hitNo description
PfamPF139211.9E-18102160No hitNo description
PROSITE profilePS5129417.657150200IPR017930Myb domain
SMARTSM007172.9E-14150198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-20153198IPR009057Homeodomain-like
CDDcd001672.66E-11154196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEHRRIAHGA APPLTAVERF LYGQNNDALT SKKQKDPKER HPPIVRRTAV TEIVNDNKEN  60
TTFGPRKEKH LVVHGRSPIG DMVVKDATTK KRPYKNLIKG QWTSEEDRKL IRLVRQHGDR  120
KWAIVSEKLE GRAGKQCRER WHNHLRPDIK KDGWSEEEEK VLVEAHIRIG NKWAEIAKLI  180
PGRTENSIKN HWNATKRRQN SKREKKRQAN ADNNDGDDPS PAAKRPCILQ DYIKSLDNKD  240
NNNDDNKNEN SISVLSTPNQ IYSDGDSASS VLGDPYDEEL VYLQNIFENH PASLDNIGLS  300
QTSDEVNQSS SSEIMIKYPN PNSHNVVQTH HHDQGMGTVP ATTSHLASDI YLSYLLNGTT  360
SSYVDPYFPS SSSSTSSTTI EQGVHSDFLV PQANSTSERR DMDLLEMISA TTQGSNIPFP  420
LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-44971992104C-Myb DNA-Binding Domain
1msf_C2e-44971992104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195206KRRQNSKREKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05173.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472526.10.0PREDICTED: myb-related protein A-like
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLA0A0D3B2R90.0A0A0D3B2R9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A2470.0A0A3P6A247_BRAOL; Uncharacterized protein
STRINGBo3g018490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]