PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05194.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 223aa    MW: 25670.4 Da    PI: 10.1017
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05194.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.34.2e-2951106359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              +++YkeC+kNhA+s+Ggh+vDGC+Efmp  geegt +al CaAC CHR+FHR ev+ 
  Rsa1.0_05194.1_g00003.1  51 ETKYKECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLSALSCAACSCHRSFHRNEVSR 106
                              689*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-2752104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-2653104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2153104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.50354103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.73E-16148214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-24151214IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-25153210IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEHGRKCNAI TSTIKPLTNP DPEAKPGSDL SLPPFLVKKE NQKPRTRGDH ETKYKECQKN  60
HAVSTGGHVV DGCCEFMPGG EEGTLSALSC AACSCHRSFH RNEVSRHRNS TQEELISPAF  120
YRSGSLYKAM IQPRGVYQKQ RVDENGLMII RKKKRVRTKI NEEQKEKMKG FAERLGWRIL  180
KKDDEEIDKF CRLVNLRRQV FKVWLHNNKQ AMKRNGDTCD LQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181542161880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05194.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891893e-64AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433718.11e-168PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL08e-97ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A397XZJ41e-122A0A397XZJ4_BRACM; Uncharacterized protein
TrEMBLM4F6Z21e-122M4F6Z2_BRARP; Uncharacterized protein
STRINGBra036852.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.13e-96homeobox protein 28