PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05338.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 195aa    MW: 22013.9 Da    PI: 4.3814
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05338.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.75.6e-266106298
                   DUF260   2 CaaCkvlrr.kCa..kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilkl 83 
                              Ca+Ck+     C+  ++C++apyfp+++p kf  v+k+FG  nv k+l++l ++ +re a+++l+yeAear++dP+ G vgv l l
  Rsa1.0_05338.1_g00001.1   6 CAVCKFAVVgPCTlgNECIMAPYFPSTEPDKFDRVNKVFGILNVYKILRNLeEPWQREYAANALCYEAEARIQDPICGYVGVQLVL 91 
                              ******98768985578**********************************55667****************************** PP

                   DUF260  84 qqqleqlkaelallk 98 
                              +++l++lk +++++ 
  Rsa1.0_05338.1_g00001.1  92 ENKLNNLKRDIDSAL 106
                              ********9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.3E-246104IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089118.0987109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLPICAVCK FAVVGPCTLG NECIMAPYFP STEPDKFDRV NKVFGILNVY KILRNLEEPW  60
QREYAANALC YEAEARIQDP ICGYVGVQLV LENKLNNLKR DIDSALNELM ITKDKVPQYF  120
NLPIPSDFAE PSLFSLINEM LELNEDQKNQ RTRLPDVDAQ RNVDEIVGMR ENDQGDVHRA  180
DGASTSSGPP HQNQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-24611012112LOB family transfactor Ramosa2.1
5ly0_B2e-24611012112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05338.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479169.11e-113PREDICTED: LOB domain-containing protein 35-like
TrEMBLA0A398ABV91e-101A0A398ABV9_BRACM; Uncharacterized protein
STRINGBo7g108110.11e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.11e-42LOB domain-containing protein 35