PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05398.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 303aa    MW: 34683.4 Da    PI: 6.6754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05398.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC  C ksF + s L  H+r+H
  Rsa1.0_05398.1_g00002.1  4 YKCRFCFKSFINGSALGGHMRSH 26
                             9*********************9 PP
2zf-C2H215.55e-05180202123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ Cgk+F++   L  H  +H
  Rsa1.0_05398.1_g00002.1 180 FKCETCGKVFKSYQALGGHRASH 202
                              89***********9999998887 PP
3zf-C2H2130.0003231253123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++Fs+   L  H r+H
  Rsa1.0_05398.1_g00002.1 231 HQCPICFRVFSSGQALGGHKRSH 253
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.26E-10326No hitNo description
PfamPF139127.5E-4327IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.028426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.26E-10175202No hitNo description
PfamPF139121.9E-11179204IPR007087Zinc finger, C2H2
SMARTSM003550.013180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576676.18E-5227255No hitNo description
PROSITE profilePS501579.141231253IPR007087Zinc finger, C2H2
SMARTSM003550.081231253IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-10231253IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGSALG GHMRSHMLTL SSKRDLYQEE ERPPSQLSEE TESDASSSFD  60
EEEEDHLKST RVDDKEMEFG ISESETESSR NINPTRRRSK RTRKLGSFDF DFKKLKTVQD  120
GETEHHHSSA SDTTTEEDLA FCLIMLSRDK WKKKQTVVEE EDDDDESDHE CKNRGGRGRF  180
KCETCGKVFK SYQALGGHRA SHKKNKTFTK TEHEKTEYSV NGGGVSEKKI HQCPICFRVF  240
SSGQALGGHK RSHGINNIVS GRVLSVNGVV RIPKEVKDHR MIDLNLPAPN EDDHEPSVVF  300
DEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05398.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465594.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-110ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A078HGQ81e-134A0A078HGQ8_BRANA; BnaA04g26050D protein
TrEMBLA0A3P6D0F91e-134A0A3P6D0F9_BRACM; Uncharacterized protein
TrEMBLM4FGU71e-134M4FGU7_BRARP; Uncharacterized protein
STRINGBra040325.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-98C2H2-like zinc finger protein