PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05505.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 348aa    MW: 38661.9 Da    PI: 9.735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05505.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.8e-1154105147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                              +++WT eE+e l  +++++G g Wk I r         +R+  ++k++w+++
  Rsa1.0_05505.1_g00001.1  54 KLKWTGEEEEALRAGIERHGAGKWKNILRDPDfshqlSNRSNIDLKDKWRNL 105
                              689**********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.40149111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-1350106IPR009057Homeodomain-like
SuperFamilySSF466892.47E-1552111IPR009057Homeodomain-like
SMARTSM007179.8E-753108IPR001005SANT/Myb domain
CDDcd116605.00E-2156106No hitNo description
PfamPF139217.1E-757107No hitNo description
SMARTSM005263.4E-15175240IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-10176240IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.032177251IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-12178240IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-8179239IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
ILQSPNLLLI KVFNNKKKKE ANNSCEEEPK SCRNSRRRNP ITVRRKEGKM GNQKLKWTGE  60
EEEALRAGIE RHGAGKWKNI LRDPDFSHQL SNRSNIDLKD KWRNLCVAPG TQFVKDKPRT  120
TKVKEEGVTL ASSVSPTAAT PPPHANNSSS SSPATTSLPR TASSEFGVDN FVVDNKNAPR  180
YDAMIFEAIS ELADANGSDV GSIFSFIEPR HEVPPTFRRV LSSRLRRLAA QGKLSKVSNS  240
KPLLNFYKLP DGSETIRTTT PTPKLKETNV KPRQSYNQPP SVSQQMIEEA AITAACKVVE  300
AENNMNVAKV AVEELEKTTK LADETELVLE LAKEMHEQCC RGEVVVLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05505.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895076e-97AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896076e-97AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453047.10.0PREDICTED: telomere repeat-binding factor 5 isoform X1
SwissprotF4IEY41e-113TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A397Z0R51e-157A0A397Z0R5_BRACM; Uncharacterized protein
STRINGBo6g116150.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]