PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05545.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 233aa MW: 25081.3 Da PI: 11.1072

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05545.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127	1.9e-39	34	192	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 +kk +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + sas+ Rsa1.0_05545.1_g00002.1 34 VKKPLAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSttsT---CTMSASSL 116 689999*******************************************************999997774332...33333322 PP TCP 86 ssg...........................................kaaksaakskksqksaasalnlakesraka 118 ++ +a +++ ++qk++++al+++++ +++ Rsa1.0_05545.1_g00002.1 117 DHKpllgsspfilgkrlranedsggaipagfwaaparpelgqvwsfAAGSQQVMLLQQQKQQEAALSVHQHRQQQG 192 2223556777888888888888899999**************98444444444444444444577776544333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-33	39	187	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.59	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSNNTNGVMI SNRDILERQR QQQQQQPSEG ALVVKKPLAK DRHTKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTTSTCT MSASSLDHKP 120 LLGSSPFILG KRLRANEDSG GAIPAGFWAA PARPELGQVW SFAAGSQQVM LLQQQKQQEA 180 ALSVHQHRQQ QGAMGEASAA RVGNYLQVPG HLNLLASLSG GAPGSGRREG DTR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05545.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436782.1	1e-171	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	3e-98	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J3E1H4	1e-116	A0A1J3E1H4_NOCCA; Transcription factor TCP7 (Fragment)
STRING	XP_006394596.1	1e-107	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-67	TCP family protein