PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05661.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 361aa    MW: 39800.9 Da    PI: 7.2676
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05661.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17123172155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Rsa1.0_05661.1_g00003.1 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 172
                              78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-9123172IPR001471AP2/ERF domain
CDDcd000181.01E-11123179No hitNo description
SuperFamilySSF541711.5E-15123180IPR016177DNA-binding domain
PROSITE profilePS5103217.359124180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-17124180IPR001471AP2/ERF domain
SMARTSM003801.3E-30124186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMLDLNLDVA VSAESTQMDE SVTSNSSVVN AEASSCIDGE EELCSSTRAV KFQFEILKGG  60
EEEEEDGSDV MKKTKEFFPV AQSSVDISFQ RGGADAATGA MVVMQPPAQP VKKSRRGPRS  120
KSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAVKF RGLEADINFI  180
ISDYEEDLKQ MANLSKEELV QVLRRQSSGF SRSNSRYQGV ALQKIGGWGA QMKQLNGNMI  240
EDGNRAYDKA VTKWSGREVA SLIEPHASRM IPEAANVKLD LSLGISLSLG DGPKQKDNAP  300
RLHHAPNSVM MENHINMATA TCDTPFNLLK RGSDHLINRH VLHPSAFFSP MLLKNSKLCS  360
T
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05661.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0743731e-164AY074373.1 Arabidopsis thaliana At5g60120 mRNA sequence.
GenBankBT0019161e-164BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470140.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG21e-177TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A3P6ALY70.0A0A3P6ALY7_BRACM; Uncharacterized protein
STRINGBra020262.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-142target of early activation tagged (EAT) 2