PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05910.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

EIL

Protein Properties

Length: 315aa MW: 36949.1 Da PI: 8.6962

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05910.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	280.5	6.7e-86	41	258	35	260
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 35 kksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlils 120 + ++ +e+++ k +++ i kYM+k+mevcnaqGfvYgiipe+g+p +as++L++WWk+kv+fd+ngp ai+k+q n++ + Rsa1.0_05910.1_g00001.1 41 MRLKRLKEHIKNKERDDE-QLISKYMFKMMEVCNAQGFVYGIIPEEGRPIISASSNLQEWWKDKVRFDLNGPLAIAKHQELNNMIN 125 4556889*99999999.689****************************************************77777766 PP XXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--..-----GGG--HHH CS EIN3 121 gesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqg.tppykkphdlkkaw 205 e+++ +++ +sl elqD tlg LLsalm hcdppqrrfp ek v pPWWPtG+e ww+ +dqg +ppykkphdlkk w Rsa1.0_05910.1_g00001.1 126 -EDCNAIANGLVRKSLRELQDPTLGWLLSALMPHCDPPQRRFPFEKRVRPPWWPTGEEYWWP-----RDQGlAPPYKKPHDLKKSW 205 .45555789*************************************************.....99999********** PP HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--X CS EIN3 206 kvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatv 260 k++vLt+vikh+sp ire + qsk+l +km+ ke++++++v+ qee+ ++ Rsa1.0_05910.1_g00001.1 206 KIGVLTSVIKHLSPG--TIREIVTQSKSLRNKMTTKEKDIWFNVIDQEEASRHEK 258 *********98..89****************************865544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	5.7E-84	60	252	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.2E-52	136	259	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.27E-46	139	255	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVFSEMGMRS NTGFFFSDDN GNTDDEFDVD KLEKRIWTQE MRLKRLKEHI KNKERDDEQL 60 ISKYMFKMME VCNAQGFVYG IIPEEGRPII SASSNLQEWW KDKVRFDLNG PLAIAKHQEL 120 NNMINEDCNA IANGLVRKSL RELQDPTLGW LLSALMPHCD PPQRRFPFEK RVRPPWWPTG 180 EEYWWPRDQG LAPPYKKPHD LKKSWKIGVL TSVIKHLSPG TIREIVTQSK SLRNKMTTKE 240 KDIWFNVIDQ EEASRHEKML NTSNFAINLG FQNMNSRKNY QPSCPNRDCL FESSEPLNMS 300 LFDGRQKHRS LYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	5e-47	139	257	5	129	Protein ETHYLENE INSENSITIVE 3
4zds_B	5e-47	139	257	5	129	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05910.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467339.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	7e-98	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A397Y747	1e-177	A0A397Y747_BRACM; Uncharacterized protein
STRING	Bo3g179880.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18788	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-100	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]