PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05938.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 533aa    MW: 59326.8 Da    PI: 5.831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05938.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.7e-1371655333374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               +L+ecA+av++ d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++
  Rsa1.0_05938.1_g00001.1 165 GTLYECAKAVENCDVAMTDWLISQLQHMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEAC 247
                              689****************************************************************9...9************** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                              P++kf++  aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +
  Rsa1.0_05938.1_g00001.1 248 PYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPRVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMC 333
                              **************************************************************999999****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              gvpfef+  +a  ++++e+e+L v++gEalaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+
  Rsa1.0_05938.1_g00001.1 334 GVPFEFHG-AALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFV 418
                              ********.899************************************************************************** PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ +
  Rsa1.0_05938.1_g00001.1 419 ETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESY 504
                              ************************************************************************************** PP

                     GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ y++ee++g+l+lgWk++pL++ +aWr
  Rsa1.0_05938.1_g00001.1 505 SEK-YTLEERDGALYLGWKNQPLITSCAWR 533
                              *65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.613137514IPR005202Transcription factor GRAS
PfamPF035141.6E-134165533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEATQKHIIQ DGSSMFYHQP SSVVKQMDIS VQTFDSYCTL ESSSGTKSHH PCPNNNNNIT  60
SSTTSFSSNG SPVSQSNNTN NNTSQFSPED NNNNSPLSGS SATNNNETEL SLMLKDLETA  120
MMEPDLEDTS FNGYEFGQQQ QQHRAAASSA MYRSMEMISR GDLKGTLYEC AKAVENCDVA  180
MTDWLISQLQ HMVSVSGEPV QRLGAYMLEG LVARLASSGS SIYKALRCKD PTGPELLTYM  240
HILYEACPYF KFGYESANGA IAEAVKNESF VHIIDFQISQ GGQWVSLIRA LGARPGGPPR  300
VRITGIDDPR SSFARQGGLE LVGQRLGKLA EMCGVPFEFH GAALCCTEVE IEKLGVRNGE  360
ALAVNFPLVL HHMPDESVTV ENHRDRLLRL VKRLSPNVVT LVEQEANTNT APFLPRFVET  420
MNHYLAVFES IDVKLARDHK ERINVEQHCL AREVVNLIAC EGVEREERHE PLGKWRSRFH  480
MAGFKPYPLS SYVNATIKGL LESYSEKYTL EERDGALYLG WKNQPLITSC AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-611665337375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05938.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436740.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLM4DQR70.0M4DQR7_BRARP; Uncharacterized protein
STRINGBra018860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]