PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05978.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 160aa    MW: 18290.1 Da    PI: 4.6382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05978.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07547344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              WT  Ed+ + +a  +++ g   +W++Ia  ++  +++ ++++++
  Rsa1.0_05978.1_g00004.1  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47
                             7*******************************9..8********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.085151IPR017877Myb-like domain
SMARTSM007175.0E-8253IPR001005SANT/Myb domain
SuperFamilySSF466893.69E-12459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-4450IPR009057Homeodomain-like
PfamPF002493.2E-6548IPR001005SANT/Myb domain
CDDcd001672.21E-6651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVLEIDSG  60
RVDVPDYMDD SAAGWDSAVA SHAQKYFLRQ NSVKKERKRS SIHDITTVDT NLAMPGSNMD  120
WSGQQESSVQ TQHQQQQSMS EFGQELMTPG GHYEEFGYRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05978.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653806.14e-89transcription factor DIVARICATA-like
TrEMBLA0A397ZYQ02e-87A0A397ZYQ0_BRACM; Uncharacterized protein
STRINGBo3g002960.11e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-43MYB family protein