PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06002.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 851aa    MW: 96423.1 Da    PI: 7.3546
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06002.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.23.8e-50301472118
                     CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                              l+e ++rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYa
  Rsa1.0_06002.1_g00002.1  30 LEEaRSRWLRPNEIHAVLSNPKYFTINVKPVNLPTSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYA 115
                              55669********************************************************************************* PP

                     CG-1  87 hseenptfqrrcywlLeeelekivlvhylevk 118
                              h+e+n+tf rrcywlL++++e+ivlvhy++++
  Rsa1.0_06002.1_g00002.1 116 HGEDNTTFVRRCYWLLDKAKENIVLVHYRDTQ 147
                              *****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.76626152IPR005559CG-1 DNA-binding domain
SMARTSM010764.4E-7829147IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-4432145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.7E-4312398IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.05E-16313399IPR014756Immunoglobulin E-set
PfamPF018331.4E-4314398IPR002909IPT domain
PfamPF127963.4E-7499577IPR020683Ankyrin repeat-containing domain
CDDcd002042.45E-15505607No hitNo description
Gene3DG3DSA:1.25.40.201.4E-17506610IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-17506611IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.963515610IPR020683Ankyrin repeat-containing domain
SMARTSM002483.4E-6548577IPR002110Ankyrin repeat
PROSITE profilePS5008811.728548580IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-5689763IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144697721IPR000048IQ motif, EF-hand binding site
PfamPF006120.21697713IPR000048IQ motif, EF-hand binding site
SMARTSM0001585712734IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012735757IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.146736760IPR000048IQ motif, EF-hand binding site
PfamPF006120.0091739757IPR000048IQ motif, EF-hand binding site
SMARTSM0001513810832IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224811840IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MDGDGGSGGL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINVKPV  60
NLPTSGRIIL FDRKMLRNFR KDGHNWKKKK DGRTVKEAHE HLKVGDEERI HVYYAHGEDN  120
TTFVRRCYWL LDKAKENIVL VHYRDTQEAA STSGDSNSPI SVSAHSSSNL VAVEDIDFNP  180
DGSLCLAANN TPVVKNHEVR LHDINTLDWD DLLVQTDLHD QSAPIVDDMS YFSEQLQNAA  240
KGSAEHVTVA DESLDALLNN GPQSRENFGK WMDSFIGDPN GSLEDPSFEA MVTLDHDPLA  300
PHHHSDLPQQ VFNITEVSPA WAYSSEKTKI VVTGLLHNSY QHLGNSNLFC ICGDSCVPAE  360
YVQAGVYRCF VPPHSPGMVN LYLSADGHKP ISQCFTFEHR PLPVFGGKPN DQESKWEEFE  420
LQVRLAHLLF TSSNKLNVLS TNITPENLLD AKKLSNKTSH LLNSWAYLIK SVQGNKVSFD  480
QAKDHIFELT LKNRIKEWLM EKVLEGRNAR DYDSKGLGVI HLCAILGYTW SIQLFSLSGL  540
SLDFRDKQGW TALHWAAYYG REKMVAALLT AGAKPNLVTD SRKDNLGGCT PADLAQQNGF  600
DGIAAYLAEK CLVAQFVAMK IAGNISGTLE ARKGEMSNQG ALPDDEQNLK DALAAYRTAA  660
EAAARIQGAF REKALKTARS KVIQFANKDE EAKSIIAAMK IQNAFRKYDT RRKIEAAYRI  720
QCRFQTWKMR REFLNMKRQA IRIQAAFRGL QARKQYRKIL WSVGVLEKAI IRWRHKRKLF  780
IGLQVSEAEE AEEKAEEDFY KASQRQAEER LERSVVRVQA MFRSKKAQED YRRMKLTHEE  840
TQLEYEFLHD I
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06002.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492571.10.0PREDICTED: calmodulin-binding transcription activator 6 isoform X1
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A397ZGR50.0A0A397ZGR5_BRACM; Uncharacterized protein
STRINGBra022188.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]