PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06017.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 1171aa MW: 132046 Da PI: 7.9257

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06017.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.7e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ ++ R+++++ Rsa1.0_06017.1_g00001.1 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVN-SRSAEMV 81 6*****************.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.382	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	4.26E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-8	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-5	46	82	IPR009057	Homeodomain-like
CDD	cd00167	9.29E-6	47	89	No hit	No description
SMART	SM01135	3.9E-58	647	748	IPR033471	DIRP domain
Pfam	PF06584	3.4E-28	647	747	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
MAPSRSTKSK YKRTPRPKAV SPHKEEETMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVNSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGRSD 120 SEQEKNETPR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG 180 KRTPRIPVSY TPEKDTSERY LSPVKKSLDQ KGDDTDDDME HEIALALTEA SQRGGSTKNP 240 HTPNRNSKMF SPDKKSEIMR SDIDMAIAKL RATDTEDACR EPSLESTEAE NVDNPGSRNE 300 LTNGEDRNAM KGKQYYRRRF GIKEDDSKEA CSGTDEAQSL GTVDEKFKQE GDGKFLKYTY 360 RSSRRKSKKS LFTAGEHMPG ILKYGSISEI QQLLVSGNLM SWLLSLEFKF DQINNEVYGG 420 IVPEDEDTAC DALQTLADLS LMMPETATDT ESSVQAEENR AGKAYVSDYK ETDPASMSKR 480 GSLRKSKQKR SVCNDLCNTE PEKKSPSSSV IRKGRQKSSP AKVPKDELAE ISKVTEPSKN 540 KGIGEESKPV GRGKRSASIR NSHEKKSIKP QDRTSSSNNM VEEDESGPST AATQKEVNLP 600 TKVRSRRKIV TEKPLTIDDV KKSEILEKFS HCISSFRARR WCLFEWFYSA IDYPWFARQE 660 FVEYLDHVGL GHVPRLTRVE WGVIRSSLGR PRLFSQQFLK EEKEKLYLYR DSVRKHYDEL 720 NTGIREGLPM DLARPLNVSQ RVICVHPKSR EIHDGSVLTV DHCRYRIQFD NPELGVEFVK 780 DTECMPLNPL ENMPASLAKN YVLSKHYSRN SSEEKMHEQV KESMPEGFPK LSCEAGHPLP 840 SPIYNINNPL KQEKLEISSS DPQAQNGVDE ALAVQLFNSQ PIGHIHAREA DVQALSELTR 900 ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI NEQARVSLAL 960 LGLRQRNTYQ ENVPSSSITH MSNSGEPDGQ LTYVDNYASD TNGFQVSEIV DSSRVKARKM 1020 VLRAIQALAL LRKDENDVVN IEEAIDFVNN QLSTDKSEGS SVQQTRAFQD QRLPSTPNPS 1080 SSTQHADDSH VNPLDQNDLQ VPSELVSRCM ATLLMIQRCT ERQFPPSEVA QVLDSAVASL 1140 QPCCSQNLPI YTEIQKCMGI IRNQILALVP S

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

MAPSRSTKSK YKRTPRPKAV SPHKEEETMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVNSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGRSD  120
SEQEKNETPR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG  180
KRTPRIPVSY TPEKDTSERY LSPVKKSLDQ KGDDTDDDME HEIALALTEA SQRGGSTKNP  240
HTPNRNSKMF SPDKKSEIMR SDIDMAIAKL RATDTEDACR EPSLESTEAE NVDNPGSRNE  300
LTNGEDRNAM KGKQYYRRRF GIKEDDSKEA CSGTDEAQSL GTVDEKFKQE GDGKFLKYTY  360
RSSRRKSKKS LFTAGEHMPG ILKYGSISEI QQLLVSGNLM SWLLSLEFKF DQINNEVYGG  420
IVPEDEDTAC DALQTLADLS LMMPETATDT ESSVQAEENR AGKAYVSDYK ETDPASMSKR  480
GSLRKSKQKR SVCNDLCNTE PEKKSPSSSV IRKGRQKSSP AKVPKDELAE ISKVTEPSKN  540
KGIGEESKPV GRGKRSASIR NSHEKKSIKP QDRTSSSNNM VEEDESGPST AATQKEVNLP  600
TKVRSRRKIV TEKPLTIDDV KKSEILEKFS HCISSFRARR WCLFEWFYSA IDYPWFARQE  660
FVEYLDHVGL GHVPRLTRVE WGVIRSSLGR PRLFSQQFLK EEKEKLYLYR DSVRKHYDEL  720
NTGIREGLPM DLARPLNVSQ RVICVHPKSR EIHDGSVLTV DHCRYRIQFD NPELGVEFVK  780
DTECMPLNPL ENMPASLAKN YVLSKHYSRN SSEEKMHEQV KESMPEGFPK LSCEAGHPLP  840
SPIYNINNPL KQEKLEISSS DPQAQNGVDE ALAVQLFNSQ PIGHIHAREA DVQALSELTR  900
ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI NEQARVSLAL  960
LGLRQRNTYQ ENVPSSSITH MSNSGEPDGQ LTYVDNYASD TNGFQVSEIV DSSRVKARKM  1020
VLRAIQALAL LRKDENDVVN IEEAIDFVNN QLSTDKSEGS SVQQTRAFQD QRLPSTPNPS  1080
SSTQHADDSH VNPLDQNDLQ VPSELVSRCM ATLLMIQRCT ERQFPPSEVA QVLDSAVASL  1140
QPCCSQNLPI YTEIQKCMGI IRNQILALVP S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06017.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492332.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Refseq	XP_018492333.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	M4ER59	0.0	M4ER59_BRARP; Uncharacterized protein
STRING	Bra031282.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]