PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06124.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 238aa    MW: 27121.3 Da    PI: 8.5562
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06124.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-068099827
                             GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                             +++++G C +  +C+F+H+p
  Rsa1.0_06124.1_g00004.1 80 YYLKNGRCGFRLSCRFNHPP 99
                             8*****************97 PP
2zf-CCCH30.94.7e-10135158326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               + Cr +++t  C+yG++C+F+H+
  Rsa1.0_06124.1_g00004.1 135 ARDCRQYLQTRRCSYGPKCRFNHP 158
                              589********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.7772100IPR000571Zinc finger, CCCH-type
SMARTSM003569.77699IPR000571Zinc finger, CCCH-type
PfamPF146080.198698No hitNo description
SMARTSM003560.23132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5135159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5138157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSDGENSVME IEEAKKTDTR TESTSIEETE GHATDLRTRE SYGRTDRRRE RDPRSSGEKM  60
ENATQTSEYP ARTGVGDSYY YLKNGRCGFR LSCRFNHPPM RYGMVQPSPY PVSPHLPESS  120
QMRHEMVQPS PYPGARDCRQ YLQTRRCSYG PKCRFNHPHA PVLGSYKCEK GGELMGVDRV  180
SSMKSYQSTL VQRVNELSVF DVVRSNSHVK LLASPGSIRF DEQIKFVQLT DTTAFIPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06124.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022544439.13e-65putative zinc finger CCCH domain-containing protein 9
RefseqXP_022552359.12e-65putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A3P6B1E93e-51A0A3P6B1E9_BRACM; Uncharacterized protein
TrEMBLM4EMX92e-51M4EMX9_BRARP; Uncharacterized protein
STRINGBra030149.1-P4e-52(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-13floral homeotic protein (HUA1)