PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06306.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 252aa MW: 27748.2 Da PI: 9.7866

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06306.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k Rt q+ s+ qky Rsa1.0_06306.1_g00002.1 86 PWTEEEHKLFLLGLEKVGKGNWKGISKNFVKSRTSTQVASHAQKY 130 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-11	77	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.036	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-17	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-17	82	133	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-10	83	133	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-11	86	130	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-9	86	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MADGTNTFAC GVSKVIMLFG FRVVLDPMRK SVSLNNLSEY ENTEVTLKIV GEDGDGQDKN 60 KTSSCYASAD DAVPVSSNRE RKRGVPWTEE EHKLFLLGLE KVGKGNWKGI SKNFVKSRTS 120 TQVASHAQKY FLRRSNLNRR RRRRSSLFDM TTATVLPLEE VQENTSQPSS LVPDVNSFTS 180 HPVMQIFPEF PAPPSGDNAS GQFSSSNLIN LVPFTFQARP TPISLNLSLA SSTLNEPSSI 240 SRHSAFNTIG VA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	143	RRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06306.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472432.1	1e-162	PREDICTED: transcription factor MYB1R1-like isoform X1
Swissprot	Q2V9B0	7e-51	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0D3AQK2	1e-112	A0A0D3AQK2_BRAOL; Uncharacterized protein
STRING	Bo2g082370.1	1e-113	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.1	1e-102	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]