PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06339.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 259aa    MW: 30017.7 Da    PI: 5.2073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06339.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.95.2e-16251491128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyW 83 
                              lpp++ Fh +de+l++ +L++ ve+++ ++   i+++ d+y++ P+ L  ++++ +++ w+fF +++      +r+ r +   g W
  Rsa1.0_06339.1_g00001.1  25 LPPCYGFHASDEQLLQLFLRPFVERSEPRT-CPIHNItDVYSSSPEILTGTYEQgGDDTWFFFGTKRYLDV-TSRNDRvIEGGGEW 108
                              699************************888.5688888**********95444426668888888777665.5788883555899* PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +g  k++++ +++l g k+t  fy   a+    + W m+e +l
  Rsa1.0_06339.1_g00001.1 109 VRKGAIKKLFE-NNTLLGFKRTQDFY---AQGMDLAYWRMEELSL 149
                              ***********.999***********...4444578999999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-1919153IPR003441NAC domain
PROSITE profilePS5100521.68525173IPR003441NAC domain
PfamPF023654.2E-926148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDQSPAPANL VDSTTSFQLH RNLNLPPCYG FHASDEQLLQ LFLRPFVERS EPRTCPIHNI  60
TDVYSSSPEI LTGTYEQGGD DTWFFFGTKR YLDVTSRNDR VIEGGGEWVR KGAIKKLFEN  120
NTLLGFKRTQ DFYAQGMDLA YWRMEELSLR VEVCIDLYHL IRTCLITCWQ RYMQFPRGIK  180
KQKLKSVSTE STPPAKKSKQ DHPVEDITPP TQNDASIPGF TAQQTETDQS PTADEDFIYP  240
SEQERREWMK ETFLNPRDQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06339.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443649.10.0PREDICTED: NAC domain-containing protein 92-like
TrEMBLA0A397YLT82e-74A0A397YLT8_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4CGA42e-73M4CGA4_BRARP; Uncharacterized protein
STRINGBra003237.1-P4e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-15NAC domain containing protein 64