PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06693.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 138aa    MW: 16096.7 Da    PI: 7.8474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06693.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-0797120326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               e C+ f+ +G C +G+ C FaHg
  Rsa1.0_06693.1_g00001.1  97 GEVCPEFRHGGDCTRGEECGFAHG 120
                              589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-593124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.44195122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-596122IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-598120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDVEHHNSSH IGRPTVVIPS RKLLTSAKSP SSASSPHKDY YYDSDSDDPY AGDHFRMYEF  60
KIRRCTRSRS HDWTDCPFSH PGEKARRRDP RRYHYTGEVC PEFRHGGDCT RGEECGFAHG  120
VFECWLHPSR YRTEACKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06693.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114759e-91AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349169e-91AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425429e-91AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026889e-91CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481822.12e-98PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW25e-76C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A078FJF87e-80A0A078FJF8_BRANA; BnaA09g17030D protein
TrEMBLA0A3P6DTV88e-80A0A3P6DTV8_BRAOL; Uncharacterized protein
STRINGBo9g059770.11e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.19e-66C3H family protein