PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06774.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 232aa    MW: 26771 Da    PI: 9.0872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06774.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-172973147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Rsa1.0_06774.1_g00001.1 29 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 73
                             7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.13E-14980IPR009057Homeodomain-like
PROSITE profilePS5129419.7562478IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-202877IPR009057Homeodomain-like
SMARTSM007175.3E-142876IPR001005SANT/Myb domain
PfamPF002493.9E-142973IPR001005SANT/Myb domain
CDDcd001671.13E-113374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERQKDMYEK LMKTTCEKGK RALKLYLLRG QITPHEETII LELHAKWGNR WSTIARSLPG  60
RTDNEIKNYW RTHFKKKTKS PTNNAEKTKS RILKRQQFQQ QRQMELQREQ QLLQFNQIDM  120
KKIMSLLDDD NNNNNGDNDF SSNSSGSYGE DGAFYVPHQI TNPTPNSGHD PNGNGVFPVA  180
PVPTPNVNEN YAIWNGIWNL DLVEGQGSFG DGACAPRKHC FQNWPIPFDL SF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06774.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894910.0AC189491.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489634.11e-113PREDICTED: myb-related protein 305-like
TrEMBLA0A0D3BD121e-96A0A0D3BD12_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AZN81e-96A0A3P6AZN8_BRAOL; Uncharacterized protein
STRINGBo3g083130.12e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-77myb domain protein 305