PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06781.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 371aa    MW: 41790.5 Da    PI: 7.7049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06781.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000112102431553
                              HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                      HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                              ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Rsa1.0_06781.1_g00001.1 210 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 243
                              7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.432195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-4209249No hitNo description
SuperFamilySSF474593.79E-9209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-7210252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMDHHHHNNH ITSSRNNSST TSELPFGPVC DNANGWIYDT NQVRYDQSTD QRLSKLTDLV  60
GKHWSLAPPS TPDMNHNLHH HFDQTSDDVS MYRQELEVKN EEDLCYNNGL NGGASLFHDA  120
IESSRSFLDI RLSRPLTDIN PSFKPSFKAL SLSEFSKKEH QTASLATVRL GSTNAGKKKR  180
CDEISDEVSK KAKCGRDSTL SPDKDLPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY  240
INFYQEQVKL LSTPYMKNSS IKDPWGGWDR EEHNKRGPKH LDLKSRGLCL VPISCTPVAY  300
HDNSATDYWS PSYRAAHISL SRRFSNDGYW RAILESRAIK GNSFGFARLP DPGELPSSAS  360
FMSTSDQAEH K
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06781.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458974.10.0PREDICTED: transcription factor bHLH111
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A397XYL90.0A0A397XYL9_BRACM; Uncharacterized protein
STRINGXP_006415377.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein