PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06830.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 505aa    MW: 54742.7 Da    PI: 4.3712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06830.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.46.5e-562374303201
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +++ +c   ++s+  e a ++L r++e +s++gdp++R+ +yf eAL++rl+       ++++ +++s+  +++ ++++k++++++
  Rsa1.0_06830.1_g00003.1 237 KAIHDCSLILDSEPPEDAAKALVRIRESVSEHGDPTERVGFYFSEALRSRLSP------NSVS-NDSSQAAVENLVMSYKTLNDAC 315
                              5677888899999999************************************9......3332.233334599999********** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171
                              P++kf+hltaNqaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL +fA+ 
  Rsa1.0_06830.1_g00003.1 316 PYFKFAHLTANQAILEATEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaRVRISGIPAPSLGesPEPSLIATGNRLGDFAKV 401
                              ************************************************77666**********99998999*************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEa 201
                              l+++fef   v + +++l+ +++rv+p+E 
  Rsa1.0_06830.1_g00003.1 402 LDLDFEFVS-VLTPIHSLDGSSFRVDPDEI 430
                              *********.799**************997 PP
2GRAS66.36.2e-21434505305374
                     GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                              +rer+e +e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y++ e++  +v l W+d pL++vS+Wr
  Rsa1.0_06830.1_g00003.1 434 QRERMEDKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySNLYSIVESKPGFVsLAWNDLPLLTVSSWR 505
                              589**************************************99*********99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.692209505IPR005202Transcription factor GRAS
PfamPF035142.2E-53237430IPR005202Transcription factor GRAS
PfamPF035142.2E-18434505IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAHQVIK QKQQQEQQQQ QPPDHQIFGI NPLSLNPWPT PNTQSLGFGL  60
SGSGFPDPFQ VNGGGDPGDS AFPFHSLDHH HPTSGGGGGG DGFRLSDFDG GAGGEFESDE  120
WMETLITGGD SVAAEGPPDC DTWQNNPDFV IYGPDPFAAY PSRLTVPCSQ PSDLNQVIAT  180
STSLPSALWA PSSPLSVPPP LPSSSPPRQK TKHPEPNDSE EDGGGSQDFD LEPPLLKAIH  240
DCSLILDSEP PEDAAKALVR IRESVSEHGD PTERVGFYFS EALRSRLSPN SVSNDSSQAA  300
VENLVMSYKT LNDACPYFKF AHLTANQAIL EATEHSSKIH IVDFGIVQGI QWPALLQALA  360
TRSSGKPARV RISGIPAPSL GESPEPSLIA TGNRLGDFAK VLDLDFEFVS VLTPIHSLDG  420
SSFRVDPDEI TGNQRERMED KEQWRVLMEN AGFESVKLSN YAVSQAKILL WNYNYSNLYS  480
IVESKPGFVS LAWNDLPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-652345053375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06830.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441267.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A0D3D8D50.0A0A0D3D8D5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EQR70.0A0A3P6EQR7_BRAOL; Uncharacterized protein
STRINGBo7g064520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-163GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]