PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06975.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 149aa    MW: 16852.7 Da    PI: 9.1491
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06975.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.81.1e-39331331101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C+kdC+++pyfp ++p kfa++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq q
  Rsa1.0_06975.1_g00002.1  33 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFACIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEAKCRVEDPVYGCVGIISLLQTQ 118
                              6************************************************************************************* PP

                   DUF260  87 leqlkaelallkeel 101
                              ++++++ la++++++
  Rsa1.0_06975.1_g00002.1 119 IQKTQTLLARTQAQI 133
                              *******99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.202.5E-4489No hitNo description
PROSITE profilePS5089123.72632133IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-3933130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVSCFNQAIE LSDVKFMQEK KLTEKKSVMN PKRCAACKYL RRRCPKDCIF SPYFPPSDPD  60
KFACIHRIYG AGNVSKMLQQ LPVQTRAEAV ESLSFEAKCR VEDPVYGCVG IISLLQTQIQ  120
KTQTLLARTQ AQIAVAQAKH SQTQISEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-373413312111LOB family transfactor Ramosa2.1
5ly0_B2e-373413312111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06975.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738471e-118AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBankDQ0566091e-118DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483059.13e-86PREDICTED: LOB domain-containing protein 23
SwissprotP594673e-75LBD23_ARATH; LOB domain-containing protein 23
TrEMBLA0A078FKY49e-83A0A078FKY4_BRANA; BnaA06g32760D protein
TrEMBLA0A291LR069e-83A0A291LR06_BRARR; Transcription factor LBD24
TrEMBLA0A397ZCU99e-83A0A397ZCU9_BRACM; Uncharacterized protein
STRINGBo7g083780.11e-78(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.11e-66LOB domain-containing protein 23