PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06996.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 498aa    MW: 55904.3 Da    PI: 4.912
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06996.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.58e-10215549722373
                     GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                              ++L r++e +s++gdp++R+ +yf+eAL+ +l           pps       ++ ++++k++++++P+ kf+hltaNqaIlea++
  Rsa1.0_06996.1_g00001.1 155 ETLIRIRESVSETGDPTERVGFYFAEALSDKLPP--------APPS------PEDFIFSYKTLNDACPYSKFAHLTANQAILEATQ 226
                              6799**************************9988........3333......3579****************************** PP

                     GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                              +++ +H++Df+i qG+QW+aLlq La+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ lg++fef + v + ++ l+
  Rsa1.0_06996.1_g00001.1 227 ESRNIHVVDFGIFQGIQWAALLQDLATRASGKPeRVRISGIPAPSLGeaPGPSLVATGNRLSDFARLLGLNFEFYP-VLTPVQLLN 311
                              *****************************77776**********99989999************************.799****** PP

                     GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                               +++rv+p+E+laVn++l+l++ lde++++ +   + L+l +sl+P++v++ e e+++n   F++r+ +al++ysa+f+sle +l 
  Rsa1.0_06996.1_g00001.1 312 GSTFRVDPDEVLAVNFMLELYKRLDETATTVD---TALRLARSLKPRIVTLGEYEVSLNPVGFANRVKNALRFYSAVFESLEPNLK 394
                              ************************99999988...*************************************************** PP

                     GRAS 277 reseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                              r+s er  vEr+l+gr+i ++v   +++    r  r+e++e+Wr  +e+aGF+pv+ s++a++qa+lll +++ s  y++ e++  
  Rsa1.0_06996.1_g00001.1 395 RDSMERLRVERVLFGRRILDLVRPGNNDkpgtRSGRMEEKEQWRVLMEKAGFEPVKPSNYAVSQANLLLWNYHySTLYSLVESEPG 480
                              **********************876655445599***************************************9999*****9999 PP

                     GRAS 358 lv.lgWkdrpLvsvSaW 373
                              ++ l W++ pL++vS+W
  Rsa1.0_06996.1_g00001.1 481 FIsLAWNNVPLLTVSSW 497
                              999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.901109476IPR005202Transcription factor GRAS
PfamPF035142.8E-99155497IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQKQQSQQE QHNPWPNQPL GYPLTDSGLS DPFQITGDPD  60
FHFPLLEPQN ATCSKGFRFS SDVEFDSDEW MESLLNGGHD PFLEFPSRLT LPSDLNPPVS  120
TAPPQLVSEE PDFDLNRPVL KAIHDCARLS DTKPETLIRI RESVSETGDP TERVGFYFAE  180
ALSDKLPPAP PSPEDFIFSY KTLNDACPYS KFAHLTANQA ILEATQESRN IHVVDFGIFQ  240
GIQWAALLQD LATRASGKPE RVRISGIPAP SLGEAPGPSL VATGNRLSDF ARLLGLNFEF  300
YPVLTPVQLL NGSTFRVDPD EVLAVNFMLE LYKRLDETAT TVDTALRLAR SLKPRIVTLG  360
EYEVSLNPVG FANRVKNALR FYSAVFESLE PNLKRDSMER LRVERVLFGR RILDLVRPGN  420
NDKPGTRSGR MEEKEQWRVL MEKAGFEPVK PSNYAVSQAN LLLWNYHYST LYSLVESEPG  480
FISLAWNNVP LLTVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1361384983375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06996.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433130.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLV4LZW20.0V4LZW2_EUTSA; Uncharacterized protein
STRINGXP_006404015.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]