PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07010.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 142aa    MW: 15575.3 Da    PI: 10.2457
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07010.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-1532114286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                              W+++ + +Liea  ++  +l+rg+l++++W+ev++++       g  ++ +qCk++++ l+k+yk +k+  ++      s++ +f+
  Rsa1.0_07010.1_g00002.1  32 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS------SSWCFFE 111
                              *************************************9744445567799*****************998886......5799**9 PP

                 trihelix  84 qle 86 
                              +l+
  Rsa1.0_07010.1_g00002.1 112 RLD 114
                              997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2630115No hitNo description
SMARTSM005950.001339121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
METTPETQPK SQSQSGGGGS SHRVPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND  60
WKEVADAVNS RHGGNGRPKT DVQCKNRIDT LKKKYKTEKA KPSSSSWCFF ERLDFLIGPA  120
AAKKSTAAGA FRSPVTKPAG SV
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07010.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489305.11e-102PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A397ZGB42e-68A0A397ZGB4_BRACM; Uncharacterized protein
TrEMBLM4F1C02e-68M4F1C0_BRARP; Uncharacterized protein
STRINGBra034866.1-P3e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-56sequence-specific DNA binding transcription factors