PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07055.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 140aa    MW: 16147.4 Da    PI: 9.8305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07055.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82.1e-4011304128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkat 86 
                              G+rF+Pt ee++++yLk+k+ +k+  ++e+i+e++iy ++P++Lp  +k+++++  wyfF++r+ ++++ +k ++r+t sgyWkat
  Rsa1.0_07055.1_g00001.1   1 GYRFSPTGEEVINYYLKNKILDKPWLVNEAISEINIYAYDPESLPslSKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGYWKAT 86 
                              99**********************999899***************5447777888********9988762667888********** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g d++v++k  +g ++g+kktLv+++g++ +g+ t Wvmhey++
  Rsa1.0_07055.1_g00001.1  87 GVDRKVKDKrgNGVEIGIKKTLVYHHGKSANGVWTPWVMHEYHI 130
                              ********9777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023652.0E-241130IPR003441NAC domain
PROSITE profilePS5100541.4541140IPR003441NAC domain
SuperFamilySSF1019417.45E-421133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
GYRFSPTGEE VINYYLKNKI LDKPWLVNEA ISEINIYAYD PESLPSLSKL ESKDLVWYFF  60
TPREYHASEK KKGTKRTTPS GYWKATGVDR KVKDKRGNGV EIGIKKTLVY HHGKSANGVW  120
TPWVMHEYHI TSLPPTQVTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-24113018140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07055.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204391e-148KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457689.15e-95PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1269e-67NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H14e-84M4F5H1_BRARP; Uncharacterized protein
STRINGBra036327.1-P6e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.19e-60NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]