PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07148.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 257aa    MW: 27765.3 Da    PI: 9.0046
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07148.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1231.8e-07197219527
                              CHHHCHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkae 27 
                              +r+rr++kNRe+A rsR+RK+a 
  Rsa1.0_07148.1_g00003.1 197 RRQRRMIKNRESAARSRARKQAA 219
                              79*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.1E-6191221No hitNo description
CDDcd147074.73E-13197248No hitNo description
SuperFamilySSF579595.06E-5197220No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNMDELLKSI WTAEEAQAMS MTSSAAATAV AQPCGGGNLQ RQGSSTLPRT ISQKTVDETL  60
GEMTLEEFLF RAGVVCSQQT GQFNRNNNNG AAGGLGFDFG FDFADQNQNN ISFNAACSGC  120
LKPFLLNKQT RICCACGYGQ QGFHWGNSIN NNNGLAGVTV AATSPGISSA ENNSLSPVPY  180
VLNRGRSNTC LEKVTERRQR RMIKNRESAA RSRARKQAAT NLAKLLGSAE RVLSRPHCSC  240
RYCRLCKKPF PCVSDSV
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07148.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9719747e-56JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488243.11e-130PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotQ9M7Q54e-57AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLA0A397ZC693e-71A0A397ZC69_BRACM; Uncharacterized protein
TrEMBLA0A3P5Z8C93e-71A0A3P5Z8C9_BRACM; Uncharacterized protein
TrEMBLM4E0W22e-71M4E0W2_BRARP; Uncharacterized protein
STRINGBra022409.1-P3e-72(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.21e-34abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]