PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07205.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 223aa MW: 24886.4 Da PI: 8.3169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07205.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.1	1.8e-06	195	217	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L +Hi + H Rsa1.0_07205.1_g00002.1 195 VCPKCSRGFRDPVDLLKHIDKdH 217 7******************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.96E-13	6	49	No hit	No description
PROSITE profile	PS51039	7.837	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.8E-11	11	50	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	2.1E-14	13	49	IPR000058	Zinc finger, AN1-type
SMART	SM00154	3.9E-5	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	5.6E-10	92	148	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	2.35E-10	95	149	No hit	No description
PROSITE profile	PS51039	8.034	100	147	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	7.3E-8	103	143	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.02	103	144	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	8.746	194	222	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGTPEFPDLG KHCSVDDCKQ IDFLPFTCDR CTQVFCLDHR SYMKHNCPKG NRGDVTVVIC 60 PLCSKGVRLN PDEDPNITWE KHVSTDCDPS SHEQTVKKKK KRCPVPRCRE LLTFSNTIRC 120 RDCSVEHCLK HRFGPDHGCA GPKKPESRWS SLLASAEASI SRLGTDLTQK LQLASGSNGN 180 AEKMPEKNGK VTVDVCPKCS RGFRDPVDLL KHIDKDHHGT SKA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07205.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189457	0.0	AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022546911.1	1e-150	zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
Swissprot	Q9SCM4	1e-135	SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBL	A0A397Y8R7	1e-149	A0A397Y8R7_BRACM; Uncharacterized protein
STRING	Bo8g091910.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3908	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57480.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Dixit A, et al. A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses. Plant Cell Environ., 2018. 41(5): p. 1171-1185 [PMID:29194659]