PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07458.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 479aa MW: 54542.4 Da PI: 6.7256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07458.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.5	5.1e-24	61	147	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g++++e+++ ++r+ +tgCka l++k+++d++w+v+++++eHnH Rsa1.0_07458.1_g00001.1 61 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTTKRETTA---VINPRSCPKTGCKAGLHMKRKEDERWVVNSFVKEHNH 143 9************************************9998777...999******************************** PP FAR1 88 elap 91 e++p Rsa1.0_07458.1_g00001.1 144 EICP 147 *996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-22	61	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-20	227	321	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MDVEGVAIDL LSTSGGNVDE SCDASTSGNA TARSSTLEHV ATFGEPRNGM EFESKEAAYY 60 FYREYARSVG FGITIKASRR SKRSGKFIDV KIACSRFGTT KRETTAVINP RSCPKTGCKA 120 GLHMKRKEDE RWVVNSFVKE HNHEICPDDF YAGVRGKKNK PGGAKKGLQL ALEEEDIKLM 180 LEHFADMQEK QPGFFYAVDL DAEKKRFRNV FWLDVKGKQD YCSFSDVVLF DAFYVRSGGC 240 RIPFAPFVGV NRHRRYALLG CALIGEESES TYTWLFRTWV KAVGGGGPPG VMITDQDRVL 300 SDVVAQVLPS ARHCFCLWDV VSRIHEMVDP FVSRDDGFTE CFRNCVHGSW TDEQFERSWS 360 EMIGKFELNE NEWFNSLFND RRKWAPHYFR GVCFAGLSGP ERSGSIVSHF DTYMNSEAAT 420 FSDFFERYVK FLQYRYDVEA KDDDNDSQSK QPTLRSSLAF EKQLSLIYTD AAFKKFQAE

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MDVEGVAIDL LSTSGGNVDE SCDASTSGNA TARSSTLEHV ATFGEPRNGM EFESKEAAYY  60
FYREYARSVG FGITIKASRR SKRSGKFIDV KIACSRFGTT KRETTAVINP RSCPKTGCKA  120
GLHMKRKEDE RWVVNSFVKE HNHEICPDDF YAGVRGKKNK PGGAKKGLQL ALEEEDIKLM  180
LEHFADMQEK QPGFFYAVDL DAEKKRFRNV FWLDVKGKQD YCSFSDVVLF DAFYVRSGGC  240
RIPFAPFVGV NRHRRYALLG CALIGEESES TYTWLFRTWV KAVGGGGPPG VMITDQDRVL  300
SDVVAQVLPS ARHCFCLWDV VSRIHEMVDP FVSRDDGFTE CFRNCVHGSW TDEQFERSWS  360
EMIGKFELNE NEWFNSLFND RRKWAPHYFR GVCFAGLSGP ERSGSIVSHF DTYMNSEAAT  420
FSDFFERYVK FLQYRYDVEA KDDDNDSQSK QPTLRSSLAF EKQLSLIYTD AAFKKFQAE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07458.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441037.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441039.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441040.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A397ZCM3	0.0	A0A397ZCM3_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZCB7	0.0	A0A3P5ZCB7_BRACM; Uncharacterized protein
STRING	Bo2g100260.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]