PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07505.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9339.63 Da    PI: 9.8437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07505.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.6e-312474151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey++
  Rsa1.0_07505.1_g00001.1 24 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN 74
                             79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.9731676IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-381675IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-291876IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
CDDcd002651.25E-371875No hitNo description
PRINTSPR004045.9E-331838IPR002100Transcription factor, MADS-box
PfamPF003195.7E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-335374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MEEGGSSHDA ESSKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYANNRYASP APS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-191874359Myocyte-specific enhancer factor 2B
1tqe_Q3e-191874359Myocyte-specific enhancer factor 2B
1tqe_R3e-191874359Myocyte-specific enhancer factor 2B
1tqe_S3e-191874359Myocyte-specific enhancer factor 2B
6c9l_A3e-191874359Myocyte-specific enhancer factor 2B
6c9l_B3e-191874359Myocyte-specific enhancer factor 2B
6c9l_C3e-191874359Myocyte-specific enhancer factor 2B
6c9l_D3e-191874359Myocyte-specific enhancer factor 2B
6c9l_E3e-191874359Myocyte-specific enhancer factor 2B
6c9l_F3e-191874359Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07505.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896471e-131AC189647.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078311.12e-47K-box region and MADS-box transcription factor family protein
RefseqXP_009104172.14e-47PREDICTED: agamous-like MADS-box protein AGL1
SwissprotP293812e-46AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A3P6C5M63e-46A0A3P6C5M6_BRAOL; Uncharacterized protein
STRINGBra003356.1-P6e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.28e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]