PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07584.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 379aa MW: 42483.1 Da PI: 8.5473

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07584.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.2e-56	68	194	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkat Rsa1.0_07584.1_g00001.1 68 LPPGFRFHPTDEELISHYLHKKVLDISFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKAT 152 79************************99.88***********8888899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrle Rsa1.0_07584.1_g00001.1 153 GKDKEIYR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 194 ****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-65	64	218	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	68	218	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	69	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MQLHISPSMR SSPASSTSAM TSSPATPSSS PALFSSAADL SPPSNCFLKG QKMETFCGFQ 60 KEEEQMDLPP GFRFHPTDEE LISHYLHKKV LDISFSAKAI GEVDLNKSEP WELPWMAKMG 120 EKEWYFFCVR DRKYPTGLRT NRATEAGYWK ATGKDKEIYR GKSLVGMKKT LVFYRGRAPK 180 GQKTNWVMHE YRLEGKLSAH NLPKTAKNEW VICRVFQKSA GGKKIPISSL IRIGTLGTDF 240 SPSLMPSLTD ASPFNDKTKT EPVYVPCFSN QTDQAQGNTL NCFSSPDIFH RIPLYQTQSL 300 QVSGNLQSPI LGQEHSVLHA VIDNNRRQNL KVMSVSQETA VSTDMNTDIS SDFEYGKRHA 360 QEDPSSSAGP VDLEPFWNY

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MQLHISPSMR SSPASSTSAM TSSPATPSSS PALFSSAADL SPPSNCFLKG QKMETFCGFQ  60
KEEEQMDLPP GFRFHPTDEE LISHYLHKKV LDISFSAKAI GEVDLNKSEP WELPWMAKMG  120
EKEWYFFCVR DRKYPTGLRT NRATEAGYWK ATGKDKEIYR GKSLVGMKKT LVFYRGRAPK  180
GQKTNWVMHE YRLEGKLSAH NLPKTAKNEW VICRVFQKSA GGKKIPISSL IRIGTLGTDF  240
SPSLMPSLTD ASPFNDKTKT EPVYVPCFSN QTDQAQGNTL NCFSSPDIFH RIPLYQTQSL  300
QVSGNLQSPI LGQEHSVLHA VIDNNRRQNL KVMSVSQETA VSTDMNTDIS SDFEYGKRHA  360
QEDPSSSAGP VDLEPFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	65	224	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	65	224	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	65	224	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	65	224	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	65	224	17	174	NAC domain-containing protein 19
3swm_B	1e-54	65	224	17	174	NAC domain-containing protein 19
3swm_C	1e-54	65	224	17	174	NAC domain-containing protein 19
3swm_D	1e-54	65	224	17	174	NAC domain-containing protein 19
3swp_A	1e-54	65	224	17	174	NAC domain-containing protein 19
3swp_B	1e-54	65	224	17	174	NAC domain-containing protein 19
3swp_C	1e-54	65	224	17	174	NAC domain-containing protein 19
3swp_D	1e-54	65	224	17	174	NAC domain-containing protein 19
4dul_A	1e-54	65	224	14	171	NAC domain-containing protein 19
4dul_B	1e-54	65	224	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07584.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966745	0.0	KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460655.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D3DDL1	0.0	A0A0D3DDL1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ETE3	0.0	A0A3P6ETE3_BRAOL; Uncharacterized protein
STRING	Bo7g098620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]