PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07603.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 197aa    MW: 22554.2 Da    PI: 4.3765
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07603.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.71.7e-092663643
                             HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS
             HSF_DNA-bind  6 lyeiledeelkeliswsengnsfvvldeeefakkvLpk 43
                             lye+++d+++++++swseng+sfvv de ef k +Lp+
  Rsa1.0_07603.1_g00001.1 26 LYEMVDDPSTDSIVSWSENGKSFVVGDEVEFRKALLPS 63
                             8********************************99985 PP
2HSF_DNA-bind45.12.6e-14111191288
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                              F++ +ye+++d+++++++swseng+sf+v++e+ef  +vLp+   F  + ++S++   +  g++kv+++e+        we++ ++
  Rsa1.0_07603.1_g00001.1 111 FIRDVYEMVDDPSTDSVVSWSENGKSFIVWKESEFLGDVLPSrlPFDYKDMTSLTTWFHAIGYSKVEESEH--------WEYTADY 188
                              99**************************************99667*********************99884........6666665 PP

                              XXX CS
             HSF_DNA-bind  86 Fkk 88 
                              + +
  Rsa1.0_07603.1_g00001.1 189 LVR 191
                              555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.9E-51898IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.4E-102163IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-112292IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-72663IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.7E-6107196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-17107194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.13E-13110195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-13111194IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEEGSLPRMD GDSNGETLVS YYRSILYEMV DDPSTDSIVS WSENGKSFVV GDEVEFRKAL  60
LPSWGLGHLG FSQSEKCEYS CPYFMRGQPD LKPLAKKDLP PSLAIRRQPL FIRDVYEMVD  120
DPSTDSVVSW SENGKSFIVW KESEFLGDVL PSRLPFDYKD MTSLTTWFHA IGYSKVEESE  180
HWEYTADYLV RGQPPHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07603.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895961e-111AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486312.11e-132PREDICTED: heat shock factor protein-like
TrEMBLA0A0D3C5F49e-96A0A0D3C5F4_BRAOL; Uncharacterized protein
STRINGBo4g190190.11e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-27HSF family protein