PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07775.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 294aa    MW: 32615.2 Da    PI: 6.8658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07775.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-183383256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                              ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  Rsa1.0_07775.1_g00003.1 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                             69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.21E-283288No hitNo description
SMARTSM003802.0E-343396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-283389IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-203390IPR016177DNA-binding domain
PROSITE profilePS5103220.313390IPR001471AP2/ERF domain
PfamPF008478.0E-143483IPR001471AP2/ERF domain
PRINTSPR003672.4E-93445IPR001471AP2/ERF domain
PRINTSPR003672.4E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEEQPLSKK RNMGRSRKGC MKGKGGPENA ACTFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HQQKQEVNRN MSFSSQGSSS WSFKLDTVRG  120
LDLGLGPSNG SRGSWSGSFS IPQEDDHHYN ANPCLSSSAS NVSWLLPKRS SSQDQEIVND  180
ASGLTFSTKL QPRNLMMTPD HGSSNGVWSR FLAGQQNKKE YDVSSCGSSN NKESILVPGG  240
SGGEGVHRPE VDEGAGYLEM DNLLEIDDLG LLIGKDGDFK NWCCDEFQHP WNWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07775.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475585.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_018475586.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-149DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A398A0N61e-174A0A398A0N6_BRACM; Uncharacterized protein
STRINGBra006460.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-128ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]